Retrovirus Replication

Retrovirus Replication

Biotechnology to deliver genetic material into a cellViral vectors are tools commonly used by molecular to deliver into. This process can be performed inside a living organism ( ) or in ( ). Have evolved specialized molecular mechanisms to efficiently transport their inside the cells they infect. Delivery of, or other genetic material, by a vector is termed and the infected cells are described as transduced.

First harnessed this machinery in the 1970s. Used a modified virus containing DNA from the to infect monkey cells maintained in culture.In addition to their use in molecular biology research, viral vectors are used for and the development of. Contents.Key properties of a viral vector Viral vectors are tailored to their specific applications but generally share a few key properties. Safety: Although viral vectors are occasionally created from viruses, they are modified in such a way as to minimize the risk of handling them. This usually involves the deletion of a part of the viral genome critical for.

A retrovirus is a virus whose genes are encoded in RNA, and, using an enzyme called reverse transcriptase, replicates itself by first reverse-coding its genes into the DNA of the cells it infects. Like other viruses, retroviruses need to use the cellular machinery. A retrovirus is a type of virus that replicates differently than traditional viruses do. We'll go over how their replication process differs, which retroviruses affect humans, and how retrorviral.

Such a virus can efficiently infect cells but, once the infection has taken place, requires a to provide the missing for production of new. Low toxicity: The viral vector should have a minimal effect on the of the cell it infects. Stability: Some viruses are genetically unstable and can rapidly rearrange their genomes. This is detrimental to predictability and reproducibility of the work conducted using a viral vector and is avoided in their design. Cell type specificity: Most viral vectors are engineered to infect as wide a range of as possible.

However, sometimes the opposite is preferred. The viral receptor can be modified to target the virus to a specific kind of cell. Viruses modified in this manner are said to be. Identification: Viral vectors are often given certain genes that help identify which cells took up the viral genes. These genes are called.

A common marker is to a certain antibiotic. The cells can then be isolated easily, as those that have not taken up the viral vector genes do not have antibiotic resistance, and so cannot grow in a culture with the relevant antibiotic present.Applications Basic research Viral vectors were originally developed as an alternative to of for experiments. Compared to traditional methods such as, can ensure that nearly 100% of cells are infected without severely affecting cell viability. Furthermore, some viruses into the cell facilitating stable expression.coding genes can be using viral vectors, commonly to study the function of the particular protein. Viral vectors, especially retroviruses, stably expressing such as are widely used to permanently label cells to track them and their progeny, for example in experiments, when cells infected are implanted into a host animal.Gene insertion is cheaper to carry out than.

But as the silencing is sometimes non-specific and has off-target effects on other genes, it provides less reliable results. Animal host vectors also play an important role.Gene therapy.

Main article:Gene therapy is a technique for correcting defective genes responsible for disease development. In the future, may provide a way to cure, such as, or even. Because these diseases result from in the DNA sequence for specific genes, gene therapy trials have used viruses to deliver unmutated copies of these genes to the cells of the patient's body. There have been a huge number of laboratory successes with gene therapy.

Retrovirus

However, several problems of viral gene therapy must be overcome before it gains widespread use. To viruses not only impedes the delivery of genes to target cells but can cause severe complications for the patient. In one of the early gene therapy trials in 1999 this led to the death of, who was treated using an adenoviral vector.Some viral vectors, for instance, insert their genomes at a seemingly random location on one of the host, which can disturb the function of cellular genes and lead to cancer. In a trial conducted in 2002, four of the patients developed leukemia as a consequence of the treatment; three of the patients recovered after chemotherapy.

Are much safer in this respect as they always integrate at the same site in the human genome, with applications in various disorders, such as. Vaccines. It has been suggested that be into this section.

Proposed since July 2019.Viruses expressing proteins are currently being developed as against these pathogens, based on the same rationale as. Recognize cells infected with based on the foreign proteins produced within the cell. Is crucial for protection against viral infections and such diseases as. A viral vaccine induces expression of pathogen proteins within host cells similarly to the and other. However, since viral vaccines contain only a small fraction of pathogen genes, they are much safer and sporadic infection by the pathogen is impossible. Are being actively developed as vaccines.Types Retroviruses.

Main article:are one of the mainstays of current gene therapy approaches. The recombinant retroviruses such as the Moloney have the ability to integrate into the host genome in a stable fashion. They contain a to make a DNA copy of the RNA genome, and an integrase that allows integration into the host. They have been used in a number of FDA-approved clinical trials such as the trial.Retroviral vectors can either be replication-competent or replication-defective.

Replication-defective vectors are the most common choice in studies because the viruses have had the coding regions for the genes necessary for additional rounds of virion replication and packaging replaced with other genes, or deleted. These virus are capable of infecting their target cells and delivering their viral payload, but then fail to continue the typical lytic pathway that leads to cell lysis and death.Conversely, replication-competent viral vectors contain all necessary genes for virion synthesis, and continue to propagate themselves once infection occurs. Because the viral genome for these vectors is much lengthier, the length of the actual inserted gene of interest is limited compared to the possible length of the insert for replication-defective vectors.

Depending on the viral vector, the typical maximum length of an allowable DNA insert in a replication-defective viral vector is usually about 8–10 kB. While this limits the introduction of many genomic sequences, most sequences can still be accommodated.The primary drawback to use of retroviruses such as the Moloney retrovirus involves the requirement for cells to be actively dividing for. As a result, cells such as are very resistant to infection and transduction by retroviruses.There is concern that due to integration into the host might lead to.

This concern remained theoretical until gene therapy for ten patients using Maloney resulted in two cases of leukemia caused by activation of the due to nearby integration of the vector. Lentiviruses. Packaging and transduction by a lentiviral vector.are a subclass of Retroviruses.

They are sometimes used as thanks to their ability to integrate into the of non-dividing cells, which is the unique feature of Lentiviruses as other Retroviruses can infect only dividing cells. The viral genome in the form of is when the virus enters the cell to produce, which is then inserted into the genome at a random position (recent findings actually suggest that the insertion of viral DNA is not random but directed to specific active genes and related to genome organisation ) by the viral.

The vector, now called a, remains in the genome and is passed on to the progeny of the cell when it divides. There are, as yet, no techniques for determining the site of integration, which can pose a problem. The can disturb the function of cellular genes and lead to activation of promoting the of, which raises concerns for possible applications of lentiviruses in gene therapy. However, studies have shown that lentivirus vectors have a lower tendency to integrate in places that potentially cause cancer than gamma-retroviral vectors.

Retrieved 18 March 2016. ^. Masten Space Systems. Masters in satellite engineering Retrieved August 11, 2017.

More specifically, one study found that lentiviral vectors did not cause either an increase in tumor incidence or an earlier onset of tumors in a mouse strain with a much higher incidence of tumors. Moreover, clinical trials that utilized lentiviral vectors to deliver gene therapy for the treatment of HIV experienced no increase in mutagenic or oncologic events.For safety reasons lentiviral vectors never carry the genes required for their replication. To produce a lentivirus, several are into a so-called packaging, commonly.

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One or more plasmids, generally referred to as packaging plasmids, encode the, such as the and the. Another plasmid contains the genetic material to be delivered by the vector. It is to produce the single-stranded RNA viral genome and is marked by the presence of the ψ (psi) sequence. This sequence is used to package the genome into the virion.Adenoviruses. Main article:As opposed to lentiviruses, adenoviral DNA does not integrate into the genome and is not replicated during cell division. This limits their use in basic research, although adenoviral vectors are still used in in vitro and also in vivo experiments. Their primary applications are in.

Retrovirus replication steps

Since humans commonly come in contact with, which cause respiratory, gastrointestinal and eye infections, majority of patients have already developed which can inactivate the virus before it can reach the target cell. To overcome this problem scientists are currently investigating that infect different species to which humans do not have immunity.Adeno-associated viruses. Main article:Adeno-associated virus (AAV) is a small virus that infects humans and some other primate species. AAV is not currently known to cause disease, and causes a very mild immune response.

AAV can infect both dividing and non-dividing cells and may incorporate its genome into that of the host cell. Moreover, AAV mostly stays as (replicating without incorporation into the chromosome); performing long and stable expression. These features make AAV a very attractive candidate for creating viral vectors for gene therapy.

However, AAV can only bring up to 5kb which is considerably small compared to AAV's original capacity.Furthermore, because of its potential use as a gene therapy vector, researchers have created an altered AAV called (scAAV). Whereas AAV packages a single strand of DNA and requires the process of second-strand synthesis, scAAV packages both strands which anneal together to form double stranded DNA.

By skipping second strand synthesis scAAV allows for rapid expression in the cell. Otherwise, scAAV carries many characteristics of its AAV counterpart.Hybrids Hybrid vectors are that are to have qualities of more than one vector. Viruses are altered to avoid the shortcomings of typical viral vectors, which may have limited loading capacity, immunogenicity, and fail to support long-term adequate. Through the replacement of undesirable elements with desired abilities, hybrid vectors may in the future outperform standard transfection vectors in terms of safety and therapeutic efficiency. Challenges in application The choice of a to deliver material to cells comes with some logistical problems.

There are a limited number of viral vectors available for therapeutic use. Any of these few viral vectors can cause the body to develop an if the vector is seen as a foreign invader. Once used, the viral vector cannot be effectively used in the patient again because it will be recognized by the body. If the or fails in, the virus can't be used again in the patient for a different vaccine or gene therapy in the future. Pre-existing against the viral vector could also be present in the patient rendering the therapy ineffective for that patient. It is possible to counteract pre-existing immunity when using a viral vector for by with a non-viral, but this method presents another expense and obstacle in the vaccine distribution process.

Pre-existing immunity may also be challenged by increasing vaccine dose or changing the route. Some shortcomings of viral vectors (such as genotoxicity and low transgenic expression) can be overcome through the use of.See also.References.

Wang-Shick Ryu, in, 2017 AbstractRetroviruses (family Retroviridae) are enveloped (about 100 nm in diameter), icosahedral viruses that possess a RNA of about 7–10 kb. Retroviruses are divided into two classes: simple retrovirus and complex retrovirus (ie, lentivirus or HIV). The simple retroviruses encode three polyproteins, termed Gag, Pol, and Env, whereas the complex retroviruses encode six accessory proteins, in addition to the polyproteins.

Retroviruses replicate by converting the RNA genome into the DNA intermediate. Reverse transcription occurs inside nucleocapsids during entry and the resulting double-strand DNA becomes integrated into the chromosome (ie, provirus). Notably, chromosomal integration of the viral DNA is an obligate step of the viral life cycle. Viral genomic RNA, which first serves as mRNA for Gag and Pol polyprotein, is packaged into nucleocapsids during assembly. In, 2011 Publisher SummaryRetroviruses in tissue filtrates from chickens with leukosis were investigated in 1908. The two related viruses—avian leukosis and avian sarcoma viruses—are prototypic of the etiologic agents of similar infectious malignant tumors now recognized in many other animal species, including cattle, cats, mice, and primates. The family Retroviridae is classified currently into two subfamilies (Orthoretrovirinae and Spumaretrovirinae) and seven genera.

The family includes many viruses of importance in veterinary and human medicine, and to biomedical science in general. The term “retro” reflects the property of retroviruses to use their RNA genome to produce DNA intermediates using reverse transcriptase (RT), an RNA-dependent DNA polymerase that is present within the virions of all members of the family. The study of the enzymes and proteins encoded by retroviruses has defined fundamental mechanisms of cell transformation and other important paradigms of cell biology.

Since the 1980s, retroviruses are demonstrated to cause a number of important human diseases, including lymphomas, leukemias, and acquired immunodeficiency disease syndrome (AIDS), which has further catalyzed intensive investigation of both human and animal retroviruses. Retroviruses are a diverse group of RNA viruses that all replicate using reverse transcriptase, a virus-encoded enzyme that synthesizes a DNA copy from the RNA viral genome. All retroviruses contain reverse transcriptase and a diploid genome with two copies of single-stranded, positive-sense RNA. Christopher J. Murphy, in, 2017 AbstractRetroviruses have complex replication strategies. Many cause diseases of major importance to humans and domestic animals. Both cellular and viral proteins are involved in complex pathways regulating virus replication.

Among the retroviruses human immunodeficiency virus (HIV) represents the classic example of a new virus introduced into the human population. The resulting AIDS epidemic around the world has led to intensive research as to the interactions between virus and cells of the immune system. Anti-retroviral therapy has been successful in prolonging life expectancy among infected patients. However, attempts to develop a vaccine have proved disappointing despite enormous efforts. Karn, in, 2001 Retroviruses and CancerRetroviruses cause tumors by a wide variety of mechanisms, but a common theme is the activation of oncogenes.

Induction of tumors by nonacutely transforming retroviruses is due to retroviral insertion adjacent to cellular proto-oncogenes. Retroviral integration is mutagenic since the proviral genome is inserted at random into regions of actively transcribed chromatin. When a retrovirus integrates near a cellular proto-oncogene tumors frequently result because the viral LTR acts as a dominant control element that stimulates aberrant expression of the oncogene.Although integration is irreversible, the provirus can undergo partial deletion by homologous recombination between the long terminal repeats. Proviruses can also recombine with cellular genes that are adjacent to their sites of integration giving rise to defective viruses that are capable of transducing fragments of cellular genes. Many highly oncogenic viruses are defective viruses that carry oncogenes initially acquired by nonhomologous recombination events. A ‘helper’ virus supplying the proteins needed for viral growth is required to permit the replication of the defective oncogenic viruses.In certain retroviruses the envelope gene can act as an oncogene by interacting with receptor proteins that are normally used as growth factor receptors. For example, the envelope gene of the Friend erythroleukemia virus produces massive erythroid proliferation by binding to, and activating, the erythropoietin (Epo) receptor.

FRANK FENNER. WHITE, in, 1987The family Retroviridae consists of three subfamilies— Oncovirinae, Lentivirinae, and Spumavirinae—only the first of which contains tumorigenic viruses, the oncoviruses. The lentiviruses cause important chronic diseases in sheep, goats, and horses, and this subfamily also includes the etiological agent of human acquired immunodeficiency syndrome.

The spumaviruses are not pathogenic and are recognized only when they are found in cultured cells. As explained in Chapter 12, tumor virologists use the vernacular term “ retrovirus” to refer to the members of the family Retroviridae with which they work. However, all tumor-producing retroviruses belong to the subfamily Oncovirinae. Since in this chapter we are concerned with retroviruses belonging to two subfamilies, Oncovirinae and Lentivirinae, we will use “retrovirus” when referring to the family as a whole and “oncovirus” or “lentivirus” when referring to viruses of these subfamilies. All retroviruses have an outer envelope of lipid and viral proteins; the envelope encloses the core, consisting of other viral proteins, within which lie two molecules of viral RNA (positive single-stranded) and the enzyme reverse transcriptase, an RNA-dependent DNA polymerase. The virions have a diameter of about 100 nm ( Fig.

55.1) and, in thin section, characteristic differences can be seen in the appearance and position of the core (e.g. C-type and D-type particles), a feature that was previously used to classify retroviruses. The typical genome size is approximately 10 kilobases (kb) or less. The family Retroviridae (Latin retro, “backward”) is divided into two subfamilies ( Orthoretrovirinae and Spumaretrovirinae) and seven genera ( Fig. Classification of retroviruses is complicated by an older classification scheme based upon the ultrastructural appearance of the virion.

In this system, still in use, four different types of virus particles are recognized and designated as A, B, C, and D-type retroviruses. The morphology of virions is classified into structures with: an intracellular double membrane lacking budding forms (A), an extracellular eccentric, spherical core (B), a central, spherical core (C), or a cylindrical core (D) ( Fig. Other classification schemes are based upon horizontal versus vertical transmission of individual retroviruses, or their ability to transform infected cells ( oncogenic retroviruses). Currently, the most widely accepted taxonomic classification of retroviruses is based upon their genomic sequence; viruses are thereby grouped by evolutionary relatedness ( Fig.

Phylogenetic analysis of conserved regions of the retrovirus polymerase gene Courtesy of S. Quackenbush and J.

An amino acid sequence alignment was constructed of residues in domains 1–4 and part of domain 5 of reverse transcriptase (Xiong, Y., Eickbush, T.H., 1990. 9, 3353–3362). An unrooted neighbor-joining phylogenetic tree was constructed by using the PHYLIP package (Felsenstein, J., 1995.

PHYLIP Phylogeny Inference Package Version 3.57c. University of Washington, Seattle). From King, A.M., Adams, M.J., Carstens, E.B., Lefkowitz, E.J., (Eds.), 2012.

Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA, p. Copyright © Elsevier (2012), with permission. Structure of retrovirus particles. (Top) Schematic cartoon (not to scale) shows the inferred locations of the various structures and proteins. (Bottom) (A) Alpharetrovirus: Avian leukosis virus (ALV); type “C” morphology; (B) Betaretrovirus: Mouse mammary tumor virus (MMTV); type “B” morphology; (C) Gammaretrovirus: Murine leukemia virus (MLV); (D) Deltaretrovirus: Bovine leukemia virus (BLV); (E) Lentivirus: Human immunodeficiency virus 1 (HIV-1); (F) Spumavirus: Simian foamy virus (SFVepz(hu)) (formerly called HFV). Courtesy of M.

Gonda, reproduced with permission from J.M. Varmus (Eds.), 1997. Cold Spring Harbor laboratory, Cold Spring Harbor, NY.

From King, A.M., Adams, M.J., Carstens, E.B., Lefkowitz, E.J., (Eds.), 2012. Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA, p.

Copyright © Elsevier (2012), with permission.The subfamily Orthoretrovirinae is further subdivided into six genera, Alpharetrovirus, Betaretrovirus, Gammaretrovirus, Deltaretrovirus, Epsilonretrovirus, and Lentivirus, whereas the subfamily Spumaretrovirinae includes only a single genus, Spumavirus ( Fig. Viruses included in five of these genera are potentially oncogenic (formerly known as oncoviruses), whereas members included in the genera Lentivirus and Spumavirus are not oncogenic. Lentivirus infections are characterized by a prolonged incubation period between initial infection to occurrence of disease (from the Latin “lenti,” meaning “slow”). Spumaviruses are named for their tendency to cause distinctive and characteristic vacuolation of the cytoplasm of infected cells (from the Greek “spuma,” meaning “foam”). Despite significant efforts, spumaviruses have not been convincingly associated with diseases in animals.

In, 2012 Publisher SummaryThis chapter focuses on Retroviridae family, which consists of two subfamilies, Orthoretrovirinae and Spumaretrovirinae. Its member genuses include Alpharetrovirus, Betaretrovirus, Gammaretrovirus, and Spumavirus.

The virions are spherical, enveloped and are 80–100 nm in diameter. Glycoprotein surface projections are about 8 nm in length and the internal core constitutes the viral nucleocapsid. The apparently spherical nucleocapsid (nucleoid) is eccentric for members of the genus Betaretrovirus, concentric for members of the genera Alpharetrovirus, Gammaretrovirus, Deltaretrovirus and Spumavirus, and rod or truncated cone-shape for members of the genus Lentivirus. The virions are relatively resistant to UV light and the surface glycoproteins may be partially removed by proteolytic enzymes.

The RNA constitutes about 2% of the virion dry weight and the monomers are held together by hydrogen bonds. Proteins constitute about 60% of the virion dry weight and there are 3–6 internal, nonglycosylated structural proteins, encoded by the gag gene. Lipids constitute about 35% of the virion dry weight, which are derived from the plasma membrane of the host cell. The virons are composed of about 3% carbohydrate by weight and at least one (SU), and usually both, envelope proteins are glycosylated. Virions of members of the subfamily Orthoretrovirinae carry two copies of the RNA genome and entry into the host cell is mediated by interaction between the virion SU glycoprotein and specific receptors at the host cell surface. Retroviral DNA becomes integrated into the chromosomal DNA of the host, to form a provirus, by a mechanism involving the viral IN protein. The ends of the virus DNA are joined to cell DNA, involving the removal of two bases from the ends of the linear viral DNA and generating a short duplication of cell sequences at the integration site.

Gatikrushna Singh. Kathleen Boris-Lawrie, in, 2018 AbstractRetroviruses commandeer cell RNA helicases (RHs). Cell RHs are necessary for early and late events in retrovirus replication. The provirus is adopted by the cell-endogenous nuclear and cytoplasmic gene expression types of machinery.

Whereas retroviruses engender the supportive activity of cell RHs, other RNA viruses provoke theantiviral role of this superfamily of conserved proteins. In this chapter, we contrast retrovirus reliance on host RNA helicases to support their replication cycle, with the virus-encoded helicaseactivity utilized by RNA viruses in cytoplasmic factories.

Ironically, RHs are agonists to retroviruses and antagonists to other RNA viruses. Kaddis Maldonado. Parent, in, 2018 IntroductionRetroviruses have limited genomes and depend on host cell factors to facilitate their replication. Multiple host cell proteins and RNAs have been identified that interact with retroviruses to facilitate or interfere with replication, although in many cases, their exact roles during replication remain unclear. Several different experimental approaches have been utilized to identify retrovirus–cell interactions, including mass spectrometry (MS), RNA interference (RNAi), CRISPR, yeast two-hybrid studies, and deep sequencing. This chapter outlines the findings of various studies that sought to use these methods to identify host proteins and RNAs that interact with retroviruses.

Retrovirus Replication
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